org.apache.xml.security.Init.init();
        JCPXMLDSigInit.init();

        DocumentBuilderFactory dbFactory = DocumentBuilderFactory.newInstance();
        dbFactory.setNamespaceAware(true);
        Document doc = dbFactory.newDocumentBuilder().parse(new ByteArrayInputStream(xmlFileData));

        String providerName = "ru.CryptoPro.JCPxml.dsig.internal.dom.XMLDSigRI";

        final XMLSignatureFactory sigFactory = XMLSignatureFactory.getInstance(
                "DOM", (Provider) Class.forName(providerName).newInstance());

        XPathFactory factory = XPathFactory.newInstance();
        XPath xpath = factory.newXPath();

        XPathExpression expr = xpath.compile(String.format("//*[@" + ID_NAME + "='%s']", ID));
        NodeList nodes = (NodeList) expr.evaluate(doc, XPathConstants.NODESET);

        if (nodes.getLength() == 0) {
            throw new Exception("Can't find node with " + ID_NAME + ": " + ID);
        }

        NodeList callerInformationSystemSignatureNodes =
                (NodeList) xpath.compile("//*[local-name()='CallerInformationSystemSignature']").evaluate(doc, XPathConstants.NODESET);

        if (callerInformationSystemSignatureNodes.getLength() == 0) {
            throw new Exception("Can't find CallerInformationSystemSignature node");
        }

        Node callerInformationSystemSignatureNode = callerInformationSystemSignatureNodes.item(0);

        String referenceURI = "#" + ID;

        KeyStore keyStore = KeyStore.getInstance(JCP.HD_STORE_NAME);
        keyStore.load(null, null);

        IXAdESConfig container = XmlContainer.createContainer(keyType);


        PrivateKey privateKey = (PrivateKey) keyStore.getKey(
                    keyStoreAlias,
                    keyStorePassword.toCharArray());

        X509Certificate cert = (X509Certificate) keyStore.getCertificate(keyStoreAlias);


        List<Transform> transformList = new ArrayList<>();
        Transform transformC14N =
            sigFactory.newTransform(Transforms.TRANSFORM_C14N_EXCL_WITH_COMMENTS, (XMLStructure) null);
        transformList.add(transformC14N);


        Reference ref = sigFactory.newReference(referenceURI,
                sigFactory.newDigestMethod(container.getDigestMethod(), null),
                transformList, null, null);

        SignedInfo signedInfo = sigFactory.newSignedInfo(
                sigFactory.newCanonicalizationMethod(
                        CanonicalizationMethod.EXCLUSIVE, (C14NMethodParameterSpec) null),
                sigFactory.newSignatureMethod(container.getSignatureMethod(), null),
                Collections.singletonList(ref)
        );

        KeyInfoFactory keyInfoFactory = sigFactory.getKeyInfoFactory();

        X509Data x509d = keyInfoFactory.newX509Data(Collections.singletonList(cert));

        KeyInfo keyInfo = keyInfoFactory.newKeyInfo(Collections.singletonList(x509d));


        DOMSignContext dsc = new DOMSignContext(privateKey, callerInformationSystemSignatureNode);

        //if (sigType == SignatureType.SIGN_BY_ID && nodeToSign != null) {
        //    dsc.setIdAttributeNS((Element) nodeToSign, null, ID_NAME);
        //} // if

        dsc.setProperty("org.jcp.xml.dsig.internal.dom.SignatureProvider", provider);

        XMLSignature signature = sigFactory.newXMLSignature(signedInfo, keyInfo);

        signature.sign(dsc);

        OutputStream os = new FileOutputStream(outputFile);
        Transformer trans = TransformerFactory.newInstance().newTransformer();
        trans.transform(new DOMSource(doc), new StreamResult(os));

dbf.newDocumentBuilder().parse(<signed-xml-file>);